PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018453-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 305aa    MW: 33339.2 Da    PI: 10.3328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018453-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ ++k++G g W+tI +          R+  ++k++w++ 
    NNU_018453-RA  5 KQKWTSEEEAALKAGIKKHGAGKWRTILKDPEfsgvlALRSNVDLKDKWRNM 56
                     79***********************************88***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.722161IPR017930Myb domain
SuperFamilySSF466898.61E-16273IPR009057Homeodomain-like
SMARTSM007173.0E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-14457IPR009057Homeodomain-like
PfamPF002497.1E-8555IPR001005SANT/Myb domain
CDDcd116604.34E-19657No hitNo description
SuperFamilySSF467851.69E-16120198IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.8E-15120192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005266.4E-13120185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.411122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.2E-7127183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGI KKHGAGKWRT ILKDPEFSGV LALRSNVDLK DKWRNMCVMA  60
NGWGSREKAR LALKRSQQIP KHDRNPMALS TVVQSDEEIV DAKPLAISGS DTLQIAGLKK  120
SASSRLDNLI LEAITNLKEP SGSNKTSIAL YIEDQCWAPP NFKRLLSAKL KFLTASGKLI  180
KVKRKYRIAP RSAFSDRRRS SGVLLLEGRQ RDSSRDEKDD IKLFSKSQID ADLSKMRSMT  240
AEEAAIAAAR AVAEAEAAIA EAEEAAREAE AAEADAEAAQ AFAEAAMMTL KGRNASKMVR  300
LSPST
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274393.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_010274394.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_010274395.10.0PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK43e-98TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLV4S6L71e-121V4S6L7_9R
TrEMBLW1P6591e-120W1P659_AMBTC; Uncharacterized protein
STRINGVIT_03s0091g01030.t011e-117(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-96telomere repeat binding factor 1